MethylVerse 0.0.10

Python package for methylation data

MethylVerse

Library to work with WGBS, EM-seq, and/or methylation array data in one interface.

For full usage and installation documentation

Install

If you dont already have numpy and scipy installed, it is best to download Anaconda, a python distribution that has them included.

    https://continuum.io/downloads

Dependencies can be installed by:

    pip install -r requirements.txt

PyPI install, presuming you have all its requirements installed:

    pip install methylverse

Quick start

Test numpy random integers:

import MethylVerse as mv

beta_values = mv.core.read_methylation("path/to/methylation")

Run the M-PACT classifier from the cammandline

python -m MethylVerse MPACT example.bedgraph --impute --regress --call_cnvs --verbose