No project description provided
Project description
PyPl8
Image analysis package for segmenting images of microbial communities and extracting quantitative features automatically.
Background
This package makes use of the cv2 and sci-kit image libraries.
It was developed in the Dudley lab at Pacific Northwest Research Institute and is currently most useful for analyzing images of rectangularly arrayed patches/colonies on omnitrays photographed against a dark background.
Organization
-
The function in the barcode methods can be used to rename images based on a barcode visible in the image if an excel spreadsheet relating barcode numbers to relevant plate information is provided.
-
The functions in the preprocessing methods are used to crop each image to relevant areas of interest
-
ProcessImages.py contains the main functions for processing a single image or a batch of images
-
Now includes parallel batch processing
-
There are several example images included in the package which can be used for demos
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file PyPl8-0.0.3.tar.gz.
File metadata
- Download URL: PyPl8-0.0.3.tar.gz
- Upload date:
- Size: 28.5 MB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.8.0 pkginfo/1.8.2 readme-renderer/32.0 requests/2.26.0 requests-toolbelt/0.9.1 urllib3/1.26.7 tqdm/4.62.3 importlib-metadata/4.9.0 keyring/23.4.0 rfc3986/1.5.0 colorama/0.4.4 CPython/3.10.1
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
fc7d8d915f3b7f1b1bd0093e5abd0ffbd64788819d578f3f78bb2498a1acca50
|
|
| MD5 |
45e2d9027011a141465a451774d50d42
|
|
| BLAKE2b-256 |
e2c6f122e2ca23ed0523256b3620673fcebf81cb437ba2adcdcf26b7a51679bf
|
File details
Details for the file PyPl8-0.0.3-py3-none-any.whl.
File metadata
- Download URL: PyPl8-0.0.3-py3-none-any.whl
- Upload date:
- Size: 28.5 MB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.8.0 pkginfo/1.8.2 readme-renderer/32.0 requests/2.26.0 requests-toolbelt/0.9.1 urllib3/1.26.7 tqdm/4.62.3 importlib-metadata/4.9.0 keyring/23.4.0 rfc3986/1.5.0 colorama/0.4.4 CPython/3.10.1
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
97de597a8a46bf76ed0efe4b81321cb7e0aafd33787ef5da9e05c5e51c602eb9
|
|
| MD5 |
6a321fddc3d761bb376c24e674f8ae15
|
|
| BLAKE2b-256 |
8c94bec1447d2af0bfc42d290255a2f60b064df1febade8bb783ae6df6e42308
|
