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PySiTK is a research-focused toolkit containing a collection of Python helper functions. In particular it facilitates the interaction between SimpleITK and ITK.

Project description


PySiTK is a Python-based open-source toolkit that provides a collection of helper functions to facilitate IO, printing, plotting, ... and the interaction between SimpleITK and ITK_NiftyMIC.

The algorithm and software were developed by Michael Ebner at the Wellcome/EPSRC Centre for Interventional and Surgical Sciences, University College London (UCL) (2015 -- 2019), and the Department of Surgical and Interventional Sciences, King's College London (KCL) (since 2019).

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Installation of the external dependencies:

Clone the PySiTK repository by

  • git clone

Install PySiTK by running

  • pip install .

Licensing and Copyright

Copyright (c) 2019 Michael Ebner and contributors. This framework is made available as free open-source software under the BSD-3-Clause License. Other licenses may apply for dependencies.


This work is partially funded by the UCL Engineering and Physical Sciences Research Council (EPSRC) Centre for Doctoral Training in Medical Imaging (EP/L016478/1), the Innovative Engineering for Health award (Wellcome Trust [WT101957] and EPSRC [NS/A000027/1]), and supported by researchers at the National Institute for Health Research University College London Hospitals (UCLH) Biomedical Research Centre.

Project details

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Files for PySiTK, version 0.2.19
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