Pyomic is the fundamental package for multi omics included bulk and single cell analysis with Python.
Directory structure
.
├── Pyomic # Main Python package
├── pyomic_guide # Documentation files
├── sample # Some test data
├── LICENSE
└── README.md
Where to get it
Binary installers for the latest released version are available at the pypi
pip install -U Pyomic
Usage
Please checkout the documentations and tutorials at pyomic.readthedocs.io.
Reference
- [1] dynamicTreeCut was originally published by in Bioinformatics
- [2] scDrug was originally published in Computational and Structural Biotechnology Journal
- [3] MOFA was originally published in Genome Biology
- [4] COSG was originally published in Briefings in Bioinformatics
- [5] CellphoneDB was originally published in Nature
- [6] AUCell was originally available in Bioconductor, and we use the script of Pyscenic to instead.
- [7] Bulk2Space was originally available in Nature Communications
- [8] SCSA was originally availabale in Front Genet
- [9] WGCNA was originally avaliable in BMC Bioinformatics
- [10] VIA was originally avaliable in Nature Communications
Contact
- Zehua Zeng (starlitnightly@163.com)
Other
1 maintainer
Metadata
1 maintainer
Release files for Pyomic 1.2.9
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Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| Pyomic-1.2.9-py3-none-any.whl | Python 3 | none | any | Details |
Release files / Pyomic-1.2.9-py3-none-any.whl
| Download URL | Pyomic-1.2.9-py3-none-any.whl |
|---|---|
| Size | 16.1 MB |
| Tags | Python 3 |
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