SURE: SUccinct REpresentation of cells

SURE implements a discrete latent state model with normalizing flow encoder for exact estimation of cellular populations.

Installation

  1. Create a virtual environment
conda create -n SURE python=3.10 scipy numpy pandas scikit-learn && conda activate SURE
  1. Install PyTorch following the official instruction.
pip3 install torch torchvision --index-url https://download.pytorch.org/whl/cu126
  1. Install SURE
pip3 install SURE-tools

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Newer release available (4.18.37)

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for ZengFLab from gravatar.com ZengFLab

Credits

Author: Feng Zeng

License

MIT License

Requires

Python >=3.10

Classifiers

Report project as malware

Metadata

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Newer release available (4.18.37)

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for ZengFLab from gravatar.com ZengFLab

Credits

Author: Feng Zeng

License

MIT License

Requires

Python >=3.10

Classifiers

Report project as malware

Release files for SURE-tools 4.18.34

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for SURE-tools 4.18.34
File Size Uploaded
sure_tools-4.18.34.tar.gz 111.2 kB Details

Built distribution (wheel)

Table of built distributions (wheels) for SURE-tools 4.18.34
File Interpreter ABI Platform
sure_tools-4.18.34-py3-none-any.whl 129.6 kB Python 3 none any Details

Total release size: 240.7 kB

Release files / sure_tools-4.18.34.tar.gz

Download URL sure_tools-4.18.34.tar.gz
Size 111.2 kB
Tags Source
SHA-256 checksum
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Uploaded using Trusted Publishing?
What is trusted publishing? 		No
Uploaded via twine/7.0.0 CPython/3.10.18

Release files / sure_tools-4.18.34-py3-none-any.whl

Download URL sure_tools-4.18.34-py3-none-any.whl
Size 129.6 kB
Tags Python 3
SHA-256 checksum
How to use checksums 		925293d84fe15d58a933354c0f608ef6cdafee3375dfea01930e60ea30c7a322
BLAKE2b-256 checksum
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Uploaded using Trusted Publishing?
What is trusted publishing? 		No
Uploaded via twine/7.0.0 CPython/3.10.18

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2 release files

2.1.22

2 release files

2.1.21

2 release files

2.1.20

2 release files

2.1.19

2 release files

2.1.18

2 release files

2.1.17

2 release files

2.1.16

2 release files

2.1.15

2 release files

2.1.14

2 release files

2.1.13

2 release files

2.1.12

2 release files

2.1.11

2 release files

2.1.10

2 release files

2.1.9

2 release files

2.1.8

2 release files

2.1.7

2 release files

2.1.6

2 release files

2.1.5

2 release files

2.1.4

2 release files

2.1.3

2 release files

2.1.2

2 release files

2.1.1

2 release files

2.1.0

2 release files

2.0.10

2 release files

2.0.9

2 release files

2.0.8

2 release files

2.0.7

2 release files

2.0.6

2 release files

2.0.5

2 release files

2.0.4

2 release files

2.0.3

2 release files

2.0.2

2 release files

2.0.1

2 release files

1.0.10

2 release files

1.0.9

2 release files

1.0.8

2 release files

1.0.7

2 release files

1.0.6

2 release files

1.0.5

2 release files

1.0.4

2 release files

1.0.3

2 release files

1.0.2

2 release files

1.0.1

2 release files

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