A precision tracking tool for bacillus cell tracking

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for Atiyeh-Ahmadi from gravatar.com Atiyeh-Ahmadi
Meta

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD 3-Clause)
  • Author: Atiyeh Ahmadi
  • Requires: Python >=3.9
Classifiers
Report project as malware

Project description

Trackrefiner: A precision tracking tool for bacillus cell tracking
Package PyPI Latest Release Conda Latest Release
Meta DOI License - BSD 3-Clause

TrackRefiner is a post-processing tool specifically designed to refine the tracking outputs of CellProfiler, a widely used image processing tool. It improves tracking accuracy by refining segmentation and tracking outputs, pruning incorrect links, and adding missing ones. TrackRefiner combines traditional tracking methods with machine learning classifiers, requiring minimal user input while leveraging a data-driven approach to optimize results.

The general pipeline of TrackRefiner is illustrated in the following figure:

image

The following sections provide more details on:

  1. Installation Guide
  2. How to Run TrackRefiner
  3. Tutorial
  4. Reported Feature Explanations
  5. TrackRefiner Outputs
  6. Visualizing and Editing Bacterial Tracking
  7. Developers

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for Atiyeh-Ahmadi from gravatar.com Atiyeh-Ahmadi
Meta

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD 3-Clause)
  • Author: Atiyeh Ahmadi
  • Requires: Python >=3.9
Classifiers

Release history Release notifications | RSS feed

1.3

1.2.7

1.2.6

1.2.5

This version

1.2.4

1.2.3

1.2.2

1.2.1.2

1.2.1.1

1.2.1

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

trackrefiner-1.2.4.tar.gz (131.6 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

trackrefiner-1.2.4-py3-none-any.whl (160.7 kB view details)

Uploaded Python 3

File details

Details for the file trackrefiner-1.2.4.tar.gz.

File metadata

  • Download URL: trackrefiner-1.2.4.tar.gz
  • Upload date:
  • Size: 131.6 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.10.9

File hashes

Hashes for trackrefiner-1.2.4.tar.gz
Algorithm Hash digest
SHA256 6ffefbfdb3c32ec492dbb009fa310f305465a1547d262ce70af5dd229e2a4e05
MD5 b20d6c35f569cceeb2dce688e1370791
BLAKE2b-256 aae4e39b6c9a12b9336e39af24db05649f0c90ef33d695db78c4297119eed7d2

See more details on using hashes here.

File details

Details for the file trackrefiner-1.2.4-py3-none-any.whl.

File metadata

  • Download URL: trackrefiner-1.2.4-py3-none-any.whl
  • Upload date:
  • Size: 160.7 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.10.9

File hashes

Hashes for trackrefiner-1.2.4-py3-none-any.whl
Algorithm Hash digest
SHA256 55ffa188002b6faef44ead71c7f37627d276f45930b42f7d373268d207271786
MD5 4001f2d3c1f31fb518b930bc2bb882ae
BLAKE2b-256 caa944e4741b0e3e43dd68b06e8fd8b56bea6918d8d021fa4c6065cb640f6d73

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page