A precision tracking tool for bacillus cell tracking

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for Atiyeh-Ahmadi from gravatar.com Atiyeh-Ahmadi
Meta

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD 3-Clause)
  • Author: Atiyeh Ahmadi
  • Requires: Python >=3.9
Classifiers
Report project as malware

Project description

Trackrefiner: A precision tracking tool for bacillus cell tracking
Package PyPI Latest Release Conda Latest Release
Meta DOI License - BSD 3-Clause

TrackRefiner is a post-processing tool specifically designed to refine the tracking outputs of CellProfiler, a widely used image processing tool. It improves tracking accuracy by refining segmentation and tracking outputs, pruning incorrect links, and adding missing ones. TrackRefiner combines traditional tracking methods with machine learning classifiers, requiring minimal user input while leveraging a data-driven approach to optimize results.

The general pipeline of TrackRefiner is illustrated in the following figure:

image

The following sections provide more details on:

  1. Installation Guide
  2. How to Run TrackRefiner
  3. Tutorial
  4. Reported Feature Explanations
  5. TrackRefiner Outputs
  6. Visualizing and Editing Bacterial Tracking
  7. Developers

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for Atiyeh-Ahmadi from gravatar.com Atiyeh-Ahmadi
Meta

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD 3-Clause)
  • Author: Atiyeh Ahmadi
  • Requires: Python >=3.9
Classifiers

Release history Release notifications | RSS feed

1.3

1.2.7

1.2.6

This version

1.2.5

1.2.4

1.2.3

1.2.2

1.2.1.2

1.2.1.1

1.2.1

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

trackrefiner-1.2.5.tar.gz (133.0 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

trackrefiner-1.2.5-py3-none-any.whl (162.1 kB view details)

Uploaded Python 3

File details

Details for the file trackrefiner-1.2.5.tar.gz.

File metadata

  • Download URL: trackrefiner-1.2.5.tar.gz
  • Upload date:
  • Size: 133.0 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.10.9

File hashes

Hashes for trackrefiner-1.2.5.tar.gz
Algorithm Hash digest
SHA256 40d0bd17827d8baba0e45f67deb32eb65db8b7f37d8de2b8502ff7ce7b46464e
MD5 cffd5fd658bbd5e37b8c469db04448d2
BLAKE2b-256 4e2e54ad17d683fee123c7bfcd2cd066b43aee0f69c9301b9f55a4735228aa7b

See more details on using hashes here.

File details

Details for the file trackrefiner-1.2.5-py3-none-any.whl.

File metadata

  • Download URL: trackrefiner-1.2.5-py3-none-any.whl
  • Upload date:
  • Size: 162.1 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.10.9

File hashes

Hashes for trackrefiner-1.2.5-py3-none-any.whl
Algorithm Hash digest
SHA256 d83a02f63b313f8fe6ae3f4a02939b5f15ba2fee85c023a2d31896d12573b3a5
MD5 5ccae01e59ce77607ebfae8cc4004b51
BLAKE2b-256 7322cd8f2b86d0f250b32e3d93cfbdef265907a0b8949bc6dda0cca0f7d79eed

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page