aind-hcr-data-loader
Change log
See CHANGELOG.md for full details.
| Version | Date | Summary |
|---|---|---|
| v0.7.0 | 04/02/2026 | New codeocean_utils module for attaching dataset-catalog records to capsules/pipelines |
| v0.6.0 | 03/18/2026 | New pairwise/cell-typing/spot-filter modules; major HCRDataset and filters.py additions |
| v0.5.1 | 02/23/2026 | metrics_base_path, spot_filters.py, comprehensive ROI filtering pipeline |
| v0.4.0 | 10/16/2025 | Tile overlap, ROI filtering, linear unmixing, neuroglancer links, saveable_plot |
| v0.3.8 | 08/11/2025 | Cell info loading improvements, metrics paths, error handling |
Installation
To use the software, in the root directory, run
pip install -e .
To develop the code, run
pip install -e .[dev]
Contributing
Linters and testing
There are several libraries used to run linters, check documentation, and run tests.
- Please test your changes using the coverage library, which will run the tests and log a coverage report:
coverage run -m unittest discover && coverage report
- Use interrogate to check that modules, methods, etc. have been documented thoroughly:
interrogate .
- Use flake8 to check that code is up to standards (no unused imports, etc.):
flake8 .
- Use black to automatically format the code into PEP standards:
black .
- Use isort to automatically sort import statements:
isort .
Pull requests
For internal members, please create a branch. For external members, please fork the repository and open a pull request from the fork. We'll primarily use Angular style for commit messages. Roughly, they should follow the pattern:
<type>(<scope>): <short summary>
where scope (optional) describes the packages affected by the code changes and type (mandatory) is one of:
- build: Changes that affect build tools or external dependencies (example scopes: pyproject.toml, setup.py)
- ci: Changes to our CI configuration files and scripts (examples: .github/workflows/ci.yml)
- docs: Documentation only changes
- feat: A new feature
- fix: A bugfix
- perf: A code change that improves performance
- refactor: A code change that neither fixes a bug nor adds a feature
- test: Adding missing tests or correcting existing tests
1 maintainer
Metadata
1 maintainer
Release files for aind-hcr-data-loader 0.7.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| aind_hcr_data_loader-0.7.1.tar.gz | 1.3 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| aind_hcr_data_loader-0.7.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 2.5 MB
Release files / aind_hcr_data_loader-0.7.1.tar.gz
| Download URL | aind_hcr_data_loader-0.7.1.tar.gz |
|---|---|
| Size | 1.3 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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Release files / aind_hcr_data_loader-0.7.1-py3-none-any.whl
| Download URL | aind_hcr_data_loader-0.7.1-py3-none-any.whl |
|---|---|
| Size | 1.2 MB |
| Tags | Python 3 |
|
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| Uploaded via |
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