A language model suite for numbering antigen receptor sequences.
Project description
ANARCII
ANARCII is a generalised language model for antigen receptor numbering.
For the user guide please read the wiki page.
Web tool
We have a live web tool:
https://opig.stats.ox.ac.uk/webapps/sabdab-sabpred/sabpred/anarcii/
If you use this code or the web tool in your work, please cite the paper.
Citing this work
The paper
All code is based on the following paper:
ANARCII: A Generalised Language Model for Antigen Receptor Numbering
https://www.biorxiv.org/content/10.1101/2025.04.16.648720v1
Please cite:
ANARCII: A Generalised Language Model for Antigen Receptor Numbering
Alexander Greenshields-Watson, Parth Agarwal, Sarah A Robinson, Benjamin Heathcote Williams, Gemma L Gordon, Henriette L Capel, Yushi Li, Fabian C Spoendlin, Fergus Boyles, Charlotte M Deane
bioRxiv 2025.04.16.648720; doi: https://doi.org/10.1101/2025.04.16.648720
The software
Releases of this software are archived on Zenodo. If you use ANARCII in your work, please cite the paper. If you also want to cite the software specifically, this DOI always resolves to the Zenodo record for the latest version:
https://doi.org/10.5281/zenodo.15274840
If you want to cite a specific version, Zenodo provides individual DOIs for each, which you can find via the above link to the main record.
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file anarcii-2.0.2.tar.gz.
File metadata
- Download URL: anarcii-2.0.2.tar.gz
- Upload date:
- Size: 18.5 MB
- Tags: Source
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/6.1.0 CPython/3.12.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
970594c432423532fb46f9576ae432bd535ffaf8c4bcbabbc77c58e10e791697
|
|
| MD5 |
6bf0944c0901f7c4c821db856d46db3b
|
|
| BLAKE2b-256 |
9dd6e21e357789da2c0a1ac350366e6df7716ec7ec5596729be9534567e40f64
|
Provenance
The following attestation bundles were made for anarcii-2.0.2.tar.gz:
Publisher:
publish.yml on oxpig/ANARCII
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
anarcii-2.0.2.tar.gz -
Subject digest:
970594c432423532fb46f9576ae432bd535ffaf8c4bcbabbc77c58e10e791697 - Sigstore transparency entry: 259805830
- Sigstore integration time:
-
Permalink:
oxpig/ANARCII@786a05a4e41413d1136cd145c7be3bfaf4bbd325 -
Branch / Tag:
refs/tags/v2.0.2 - Owner: https://github.com/oxpig
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
publish.yml@786a05a4e41413d1136cd145c7be3bfaf4bbd325 -
Trigger Event:
push
-
Statement type:
File details
Details for the file anarcii-2.0.2-py2.py3-none-any.whl.
File metadata
- Download URL: anarcii-2.0.2-py2.py3-none-any.whl
- Upload date:
- Size: 17.6 MB
- Tags: Python 2, Python 3
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/6.1.0 CPython/3.12.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
e3df9a94763fdd701a43683485eb3000894b6e103e7800f4370aa2d420fa0b2b
|
|
| MD5 |
5ac292df07123b38a33b70f8e2c1b668
|
|
| BLAKE2b-256 |
41d4128ca34be97a503ccd05497383b9c567089a7958b09b9977a41563760799
|
Provenance
The following attestation bundles were made for anarcii-2.0.2-py2.py3-none-any.whl:
Publisher:
publish.yml on oxpig/ANARCII
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
anarcii-2.0.2-py2.py3-none-any.whl -
Subject digest:
e3df9a94763fdd701a43683485eb3000894b6e103e7800f4370aa2d420fa0b2b - Sigstore transparency entry: 259805839
- Sigstore integration time:
-
Permalink:
oxpig/ANARCII@786a05a4e41413d1136cd145c7be3bfaf4bbd325 -
Branch / Tag:
refs/tags/v2.0.2 - Owner: https://github.com/oxpig
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
publish.yml@786a05a4e41413d1136cd145c7be3bfaf4bbd325 -
Trigger Event:
push
-
Statement type:
