anarcii 2.0.5

A language model suite for numbering antigen receptor sequences.

ANARCII

ANARCII is a generalised language model for antigen receptor numbering.

For the user guide please read the wiki page.

Installation

For a full breakdown of all installation options please see: installation

pip install anarcii

Web tool

We have a live web tool:

https://opig.stats.ox.ac.uk/webapps/sabdab-sabpred/sabpred/anarcii/

If you use this code or the web tool in your work, please cite the paper.

Citing this work

The paper

All code is based on the following paper:

ANARCII: A Generalised Language Model for Antigen Receptor Numbering

https://www.biorxiv.org/content/10.1101/2025.04.16.648720v1

Please cite:

ANARCII: A Generalised Language Model for Antigen Receptor Numbering
Alexander Greenshields-Watson, Parth Agarwal, Sarah A Robinson, Benjamin Heathcote Williams, Gemma L Gordon, Henriette L Capel, Yushi Li, Fabian C Spoendlin, Fergus Boyles, Charlotte M Deane
bioRxiv 2025.04.16.648720; doi: https://doi.org/10.1101/2025.04.16.648720 

The software

Releases of this software are archived on Zenodo. If you use ANARCII in your work, please cite the paper. If you also want to cite the software specifically, this DOI always resolves to the Zenodo record for the latest version:

https://doi.org/10.5281/zenodo.15274840

If you want to cite a specific version, Zenodo provides individual DOIs for each, which you can find via the above link to the main record.