Toolbox for the analysis of smFISH images.
Project description
apiFISH (based on Big-FISH)
Installation
Dependencies
apiFISH requires Python XXX or newer. Additionally, it has the following dependencies:
- numpy (>= 1.16.0)
- scipy (>= 1.4.1)
- scikit-learn (>= 0.24.0)
- scikit-image (>= 0.14.2)
- matplotlib (>= 3.0.2)
- pandas (>= 0.24.0)
- mrc (>= 0.1.5)
For segmentation purpose, two additional dependencies can be requested:
- tensorflow (>= 2.3.0)
- tensorflow-addons (>= 0.12.1)
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Source code
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