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Arx Tools

A set of scripts that helps to import genome data into the Arx folder structure.

Quick Start

# Install
pip install arx-tools

# Initialize folder structure
export FOLDER_STRUCTURE=/path/to/folder_structure
init_folder_structure

# Import genome data
import_genome --import_dir=/path/to/genome/data --organism STRAIN --genome STRAIN.1

Documentation

📖 Documentation: docs.abrinca.com/tools

Help

All scripts have built-in help functions:

import_genome --help

Requirements

  • Python 3.9 or higher

Metadata

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