Installation
Install using pip:
pip install git+https://github.com/houndry/barbet.gitUsage
See the options for making inferences with the command:
barbet --helpRun
barbet --input GCA_000006945.2.fna --output-dir outputsOr using the large model:
barbet --input GCA_000006945.2.fna --output-dir outputs-large --largeTraining
You can train the model on releases from GTDB or your own custom dataset. See the instructions in the documentation for preprocessing and training.
Credits
Robert Turnbull, Mar Quiroga, Gabriele Marini, Torsten Seemann, Wytamma Wirth
For more information contact: <wytamma.wirth@unimelb.edu.au>
Created using torchapp (https://github.com/rbturnbull/torchapp).
1 maintainer
Metadata
1 maintainer
Release files for Barbet 0.1.1
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Source distribution (sdist)
| File | Size | Uploaded | |
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| barbet-0.1.1.tar.gz | 26.4 kB | Details |
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| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| barbet-0.1.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 56.0 kB
Release files / barbet-0.1.1.tar.gz
| Download URL | barbet-0.1.1.tar.gz |
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| Size | 26.4 kB |
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Release files / barbet-0.1.1-py3-none-any.whl
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| Size | 29.6 kB |
| Tags | Python 3 |
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