basebio 0.5.0

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BaseBio

This is a Python package for bioinformatics.

Table of Contents

• BaseBio
• Table of Contents
• Overview
• Requirements
• basebio modules

Overview

BaseBio is a Python package for bioinformatics. It provides a set of modules for running any shell command with a common function and recode of the original program monitor code in postgreSQL.

Requirements

1. Python 3.8+
2. Python modules:
   • typer (>=0.15.2,<0.16.0)
   • sqlalchemy (>=2.0.40,<3.0.0)
   • retrying (>=1.3.4,<2.0.0)

basebio modules

basebio includes the following sub-modules:

• cmd
• db