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Convert between BioNLP formats

Project description

# bconv: Python library for converting between BioNLP formats

## Supported formats

The following formats are currently supported:

  • bioc_xml, bioc_json: BioC
  • bionlp: BioNLP stand-off (output only)
  • brat: brat stand-off (output only)
  • conll: CoNLL
  • europepmc, Europe-PMC JSON (output only)
  • pubtator:, pubtator_fbk: PubTator
  • pubmed, pxml, pxml.gz: PubMed abstracts (input only)
  • pmc, nxml: PMC full-text (input only)
  • pubanno_json: PubAnnotation JSON (output only)
  • tsv, text_tsv: tab-separated values (output only)
  • txt: plain text
  • txt_json: collection of plain-text documents (input only)

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