Collection of tools for recurring tasks
Project description
bdtools
Collection of tools for recurring tasks
mask
- get_edt()
Compute Euclidean distance tranform (edt) for binary or labelled masks stored in ndarrays.
nan
- nan_filt()
Filter ndarrays ignoring NaN values. Mean, median and standard deviation filters are implemented. - nan_replace()
Replace NaN values in ndarrays based on surrounding pixels.
norm
- norm_gcn()
- norm_pct()
patch
- extract_patches()
- merge_patches()
skel
- pix_conn()
- lab_conn()
Todo
- flow functions
Bugs
- nanreplace : avoid error if no nan to replace (with iterations = "inf")
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