Bigraph-Schema

PyPI version Tutorial Units Demo

bigraph-schema provides a serializable type schema for compositional and multiscale modeling.
It defines a compact, extensible language for describing hierarchical data structures — the foundation of the Vivarium 2.0 simulation framework.

The library offers a unified interface for representing, validating, and transforming schemas and data in structured simulations.
By standardizing schema definitions, it enables interoperability between models, extensibility across frameworks, and reproducibility of computational experiments.

Installation

Install directly from PyPI:

pip install bigraph-schema

Getting Started

The following resources provide guided introductions and examples:

  • Type System Overview – Demonstrates how to use the Core API for schema inference, normalization, and serialization.

  • Bigraph Schema Basics Tutorial – Explains how to compose and visualize schema graphs using the bigraph-schema syntax.

  • Units Demo – Demonstrates Quantity, Number._units, and wire-level unit conversion.

Related Projects

  • Vivarium – a compositional framework for hybrid biological simulations.
  • Bigraph-Viz – visualization tools for bigraph-schema models.
  • Process-Bigraph – process composition and orchestration built on bigraph-schema.

License

bigraph-schema is open-source software released under the Apache 2.0 License.

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Newer release available (1.6.0)

2 maintainers

PyPI data
Data sourced directly from PyPI's database.
Avatar for eagmon from gravatar.com eagmon Avatar for youdonotexist from gravatar.com youdonotexist

Credits

Author: Eran Agmon, Ryan Spangler

Requires

Python >=3.9

Report project as malware

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

bigraph_schema-1.4.5.tar.gz (145.0 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

bigraph_schema-1.4.5-py3-none-any.whl (159.8 kB view details)

Uploaded Python 3

File details

Details for the file bigraph_schema-1.4.5.tar.gz.

File metadata

  • Download URL: bigraph_schema-1.4.5.tar.gz
  • Upload date:
  • Size: 145.0 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/7.0.0 CPython/3.13.14

File hashes

Hashes for bigraph_schema-1.4.5.tar.gz
Algorithm Hash digest
SHA256 f36a3b97ba158d44e59355331bfc3a52bb11876566adb7ad0db58ad5f43ea69e
MD5 809b3080e8defa59e433d2602ca5c216
BLAKE2b-256 1f3c063a46cb058b675e1b2fec57a2a8b6e5e4f131b7846c45bb415cfe485d46

See more details on using hashes here.

Provenance

The following attestation bundles were made for bigraph_schema-1.4.5.tar.gz:

Publisher: release.yml on vivarium-collective/bigraph-schema

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

File details

Details for the file bigraph_schema-1.4.5-py3-none-any.whl.

File metadata

  • Download URL: bigraph_schema-1.4.5-py3-none-any.whl
  • Upload date:
  • Size: 159.8 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/7.0.0 CPython/3.13.14

File hashes

Hashes for bigraph_schema-1.4.5-py3-none-any.whl
Algorithm Hash digest
SHA256 542abb9fd4d07ce433381ae297682f49f1a54be174b43c3c1962ea1b8a45e6ee
MD5 5b51d81d08d32a1c2a127f2a66c5b4a5
BLAKE2b-256 7a34232e3559e9fe17d120a72cdc27ba94dcf968f3f4c71c5972c875005e4daf

See more details on using hashes here.

Provenance

The following attestation bundles were made for bigraph_schema-1.4.5-py3-none-any.whl:

Publisher: release.yml on vivarium-collective/bigraph-schema

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

Release history Release notifications | RSS feed

1.6.0

This release

1.4.5

1.4.4

1.4.3

1.4.2

1.4.1

1.3.4

1.3.3

1.3.2

1.3.1

1.3.0

1.2.17

1.2.16

1.2.15

1.2.14

1.2.12

1.2.11

1.2.10

1.2.9

1.2.8

1.2.7

1.2.6

1.2.5

1.2.4

1.2.3

1.2.1

1.1.6

1.1.5

1.1.4

1.1.3

1.1.2

1.1.1

1.0.15

1.0.14

1.0.13

1.0.12

1.0.11

1.0.5

1.0.4

1.0.3

1.0.2

1.0.1

1.0.0

0.0.77

0.0.75

0.0.74

0.0.73

0.0.72

0.0.71

0.0.68

0.0.65

0.0.64

0.0.63

0.0.62

0.0.60

0.0.59

0.0.58

0.0.57

0.0.56

0.0.55

0.0.54

0.0.53

0.0.52

0.0.51

0.0.50

0.0.49

0.0.48

0.0.47

0.0.46

0.0.45

0.0.44

0.0.43

0.0.42

0.0.41

0.0.38

0.0.37

0.0.35

0.0.32

0.0.31

0.0.30

0.0.29

0.0.28

0.0.27

0.0.22

0.0.21

0.0.19

0.0.18

0.0.17

0.0.15

0.0.14

0.0.13

0.0.12

0.0.11

0.0.9

0.0.8

0.0.7

0.0.6

0.0.5

0.0.4

0.0.3

0.0.2

0.0.1

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Sentry Error logging StatusPage Status page