Bin Chicken - targeted recovery of low abundance metagenome assembled genomes through intelligent coassembly

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for AroneyS from gravatar.com AroneyS Avatar for wwood from gravatar.com wwood

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: GNU GENERAL PUBLIC LICENSE
  • Author: Samuel Aroney
  • Requires: Python >=3.10
Classifiers
Report project as malware

Project description

install with bioconda DOI

Bin Chicken

Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly.

Documentation can be found at https://AroneyS.github.io/binchicken/

Logo by Georgina H. Joyce | www.georginajoyce.com

Not to be confused with https://gitlab.com/andreassh/binchicken

Citation

Samuel T. N. Aroney, Rhys J. P. Newell, Gene W. Tyson and Ben J. Woodcroft. Bin Chicken: targeted metagenomic coassembly for the efficient recovery of novel genomes. bioRxiv (2024): 2024-11. https://doi.org/10.1101/2024.11.24.625082

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for AroneyS from gravatar.com AroneyS Avatar for wwood from gravatar.com wwood

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: GNU GENERAL PUBLIC LICENSE
  • Author: Samuel Aroney
  • Requires: Python >=3.10
Classifiers

Release history Release notifications | RSS feed

1.0.0b1 pre-release

This version

0.13.5

0.13.4

0.13.3

0.13.2

0.13.1

0.13.0

0.12.11

0.12.6

0.12.5

0.12.4

0.12.2

0.12.1

0.12.0

0.11.0

0.10.5

0.10.4

0.10.3

0.10.2

0.10.0

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

binchicken-0.13.5.tar.gz (802.3 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

binchicken-0.13.5-py3-none-any.whl (216.5 kB view details)

Uploaded Python 3

File details

Details for the file binchicken-0.13.5.tar.gz.

File metadata

  • Download URL: binchicken-0.13.5.tar.gz
  • Upload date:
  • Size: 802.3 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.13.7

File hashes

Hashes for binchicken-0.13.5.tar.gz
Algorithm Hash digest
SHA256 ef2a930ca12f9a1a2ea8ae0238607db4a52acacc23c576c02c98c5c3e45a4736
MD5 21b4a0b7ba71d0976597069b36afd400
BLAKE2b-256 674042ad2a7d3ffb1d2c591b4c0a5f8add1cc73a2470b1e88320f084098030c0

See more details on using hashes here.

File details

Details for the file binchicken-0.13.5-py3-none-any.whl.

File metadata

  • Download URL: binchicken-0.13.5-py3-none-any.whl
  • Upload date:
  • Size: 216.5 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.13.7

File hashes

Hashes for binchicken-0.13.5-py3-none-any.whl
Algorithm Hash digest
SHA256 8a97f73309779709d14dc359c0f158316c7ed410676f8c34fe5ab2082d305529
MD5 1bd617cfa3590e0753422035b69d3972
BLAKE2b-256 a4b9240dd608c57c85b4e0ecb05970aba4dbdc80175111b8a33ee02e93a068ce

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page