Bin Chicken
Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly.
Documentation can be found at https://AroneyS.github.io/binchicken/
Logo by Georgina H. Joyce | www.georginajoyce.com
Not to be confused with https://gitlab.com/andreassh/binchicken
Citations
Aroney, S.T.N., Newell, R.J.P., Tyson, G.W. and Woodcroft B.J. Bin Chicken: targeted metagenomic coassembly for the efficient recovery of novel genomes. Nat Methods (2025). https://doi.org/10.1038/s41592-025-02901-1.
Bin Chicken is built on the SingleM tool, which is described in the following publication:
Woodcroft B.J., Aroney, S.T.N., Zhao, R., Cunningham, M., Mitchell, J.A.M., Nurdiansyah, R., Blackall, L. & Tyson, G.W. Comprehensive taxonomic identification of microbial species in metagenomic data using SingleM and Sandpiper. Nat Biotechnol (2025). https://doi.org/10.1038/s41587-025-02738-1.
If you use Aviary (through --run-aviary), please see the Aviary documentation for how to cite Aviary and its underlying dependencies.
Release files for binchicken 0.15.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| binchicken-0.15.0.tar.gz | 807.6 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| binchicken-0.15.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 1.0 MB
Release files / binchicken-0.15.0.tar.gz
| Download URL | binchicken-0.15.0.tar.gz |
|---|---|
| Size | 807.6 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Release files / binchicken-0.15.0-py3-none-any.whl
| Download URL | binchicken-0.15.0-py3-none-any.whl |
|---|---|
| Size | 216.3 kB |
| Tags | Python 3 |
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No |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
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