13 projects
singlem
Novelty-inclusive microbial community profiling of shotgun metagenomes
kingfisher
Download/extract biological FASTA/Q read data and metadata
binchicken
Bin Chicken - targeted recovery of low abundance metagenome assembled genomes through intelligent coassembly
zenodo-backpack
Manage data bundled with bioinformatic software through Zenodo DOI integration
bird-tool-utils
Python utilities used as part of the bird suite of bioinformatic tools
aviary-genome
aviary - metagenomics pipeline using long and short reads
graftm
GraftM is a pipeline used for identifying and classifying marker gene reads from metagenomic datasets
flight-genome
flight - metagenomic binner and variant clusterer.
argparse-manpage-birdtools
Format ROFF documents (manual page format) from python's ArgumentParser object.
extern
Opinionated version of Python's subprocess
runm
UNKNOWN
tree_sisters
UNKNOWN
tree2tax
Automatic taxonomy through consistent application of tree-based thresholding
