🧬 Bio-Init
Bio-Init is a high-performance CLI framework designed to automate the scaffolding of FAIR-compliant (Findable, Accessible, Interoperable, Reusable) bioinformatics projects.
Developed for computational biologists and biomedical engineers, it enforces industry-standard directory structures and injects domain-specific boilerplate code for Genomics, Bio-ML, and Viral Simulations.
🚀 Key Features
- Interactive Wizard: A step-by-step setup guide powered by
questionary. - Modern Infrastructure: Leveraging Astral's uv for Rust-based, lightning-fast dependency resolution.
- FAIR Standards: Automatic separation of
data/raw,data/processed, andresults/. - Boilerplate Injection: Instant starter code for PyTorch models and Snakemake pipelines.
🛠 Installation
Ensure you have uv installed:
uv tool install bio-init
1 maintainer
Release files for bio-init 0.1.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| bio_init-0.1.0.tar.gz | 5.9 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| bio_init-0.1.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 16.3 kB
Release files / bio_init-0.1.0.tar.gz
| Download URL | bio_init-0.1.0.tar.gz |
|---|---|
| Size | 5.9 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
uv/0.10.9 {"installer":{"name":"uv","version":"0.10.9","subcommand":["publish"]},"python":null,"implementation":{"name":null,"version":null},"distro":{"name":"Ubuntu","version":"24.04","id":"noble","libc":null},"system":{"name":null,"release":null},"cpu":null,"openssl_version":null,"setuptools_version":null,"rustc_version":null,"ci":true}
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Release files / bio_init-0.1.0-py3-none-any.whl
| Download URL | bio_init-0.1.0-py3-none-any.whl |
|---|---|
| Size | 10.3 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
uv/0.10.9 {"installer":{"name":"uv","version":"0.10.9","subcommand":["publish"]},"python":null,"implementation":{"name":null,"version":null},"distro":{"name":"Ubuntu","version":"24.04","id":"noble","libc":null},"system":{"name":null,"release":null},"cpu":null,"openssl_version":null,"setuptools_version":null,"rustc_version":null,"ci":true}
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