Bioinformatics project scaffolder
Project description
🧬 Bio-Init
Bio-Init is a high-performance CLI framework designed to automate the scaffolding of FAIR-compliant (Findable, Accessible, Interoperable, Reusable) bioinformatics projects.
Developed for computational biologists and biomedical engineers, it enforces industry-standard directory structures and injects domain-specific boilerplate code for Genomics, Bio-ML, and Viral Simulations.
🚀 Key Features
- Interactive Wizard: A step-by-step setup guide powered by
questionary. - Modern Infrastructure: Leveraging Astral's uv for Rust-based, lightning-fast dependency resolution.
- FAIR Standards: Automatic separation of
data/raw,data/processed, andresults/. - Boilerplate Injection: Instant starter code for PyTorch models and Snakemake pipelines.
🛠 Installation
Ensure you have uv installed:
uv tool install bio-init
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