Bio2BEL HGNC

This package creates:
HGNC BEL namespace
HGNC gene families BEL namespace,
HGNC gene family membership BEL Script
orthology BEL script
Installation

bio2bel_hgnc can be installed easily from PyPI with the following code in your favorite terminal:
$ python3 -m pip install bio2bel_hgnc
or from the latest code on GitHub with:
$ python3 -m pip install git+https://github.com/bio2bel/hgnc.git@master
Setup
HGNC can be downloaded and populated from either the Python REPL or the automatically installed command line utility.
Python REPL
>>> import bio2bel_hgnc
>>> hgnc_manager = bio2bel_hgnc.Manager()
>>> hgnc_manager.populate()
Command Line Utility
bio2bel_hgnc populate
Citations
Gray KA, et al. genenames.org: the HGNC resources in 2015. Nucleic Acids Res. 2015 Jan;43(Database issue):D1079-85
Acknowledgements
This package heavily relies on Andrej Konotopez’s package PyHGNC
Metadata
Release files for bio2bel-hgnc 0.3.0
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| bio2bel_hgnc-0.3.0.tar.gz | 27.1 kB | Without provenance | Details for bio2bel_hgnc-0.3.0.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| bio2bel_hgnc-0.3.0-py3-none-any.whl | Python 3 | none | any | Details for bio2bel_hgnc-0.3.0-py3-none-any.whl |
Total release size: 47.5 kB
Release files / bio2bel_hgnc-0.3.0.tar.gz
| Download URL | bio2bel_hgnc-0.3.0.tar.gz |
|---|---|
| Size | 27.1 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Release files / bio2bel_hgnc-0.3.0-py3-none-any.whl
| Download URL | bio2bel_hgnc-0.3.0-py3-none-any.whl |
|---|---|
| Size | 20.5 kB |
| Tags | Python 3 |
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