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Username    ddomingof
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21 projects

diffupath

Last released on

Compute diffusion scores over networks from biological databases

diffupy

Last released on

Compute diffusion scores over networks

pybel-tools

Last released on

A cool pool of tools for BEL

pybel

Last released on

Parsing, validation, compilation, and data exchange of Biological Expression Language (BEL)

pybel-jupyter

Last released on

A PyBEL extension for Jupyter notebooks

pathme

Last released on

Harmonizing pathway databases using Biological Expression Language (BEL)

compath-utils

Last released on

A utilities package for ComPath

bio2bel-hgnc

Last released on

A package for converting HGNC to BEL

pykeen

Last released on

A package for training and evaluating knowledge graph embeddings

pubmed2pdf

Last released on

A Python package to download PDFs from OA publications in PubMed

bio2bel-kegg

Last released on

A wraper around the KEGG RESTful API

pathway-forte

Last released on

A Python package for comparing the effect of pathway database choice in functional enrichment and classification methods

compath

Last released on

A web application for exploring and comparing the overlaps across pathway resources

compath-resources

Last released on

ComPath Resource Utilities.

ratvec

Last released on

Generating dense embeddings for proteins using kernel PCA

pathme-viewer

Last released on

A plugin for PathMe that allows to explore overlaps across pathway databases

bio2bel-wikipathways

Last released on

A package for converting Wikipathways to BEL

bio2bel-msig

Last released on

A wrapper around MSIGDB

bio2bel-chebi

Last released on

A package for converting ChEBI to BEL

bio2bel-reactome

Last released on

A wrapper around Reactome RESTful API

compath-hgnc

Last released on

A package that wraps PyHGNC to perform mappings between different gene identifiers

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