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Username    ddomingof
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23 projects

pybel

Last released

Parsing, validation, compilation, and data exchange of Biological Expression Language (BEL)

pykeen

Last released

A package for training and evaluating multimodal knowledge graph embeddings

pybel-tools

Last released

A cool pool of tools for BEL

compath-resources

Last released

ComPath Resource Utilities

bio2bel-kegg

Last released

A package for converting KEGG gene sets into BEL

clep

Last released

A Hybrid Data and Knowledge Driven Framework for Generating Patient Representations

compath

Last released

A web application for exploring and comparing the overlaps across pathway resources

drug2ways

Last released

Reasoning over polar paths in biological networks for drug discovery applications

bio2bel-msig

Last released

A package for converting MSigDB gene sets into BEL

diffupath

Last released

Compute diffusion scores over networks from biological databases

diffupy

Last released

Compute diffusion scores over networks

pybel-jupyter

Last released

A PyBEL extension for Jupyter notebooks

pathme

Last released

Harmonizing pathway databases using Biological Expression Language (BEL)

compath-utils

Last released

A utilities package for ComPath

bio2bel-hgnc

Last released

A package for converting HGNC to BEL

pubmed2pdf

Last released

A Python package to download PDFs from OA publications in PubMed

pathway-forte

Last released

A Python package for comparing the effect of pathway database choice in functional enrichment and classification methods

ratvec

Last released

Generating dense embeddings for proteins using kernel PCA

pathme-viewer

Last released

A plugin for PathMe that allows to explore overlaps across pathway databases

bio2bel-wikipathways

Last released

A package for converting Wikipathways to BEL

bio2bel-chebi

Last released

A package for converting ChEBI to BEL

bio2bel-reactome

Last released

A wrapper around Reactome RESTful API

compath-hgnc

Last released

A package that wraps PyHGNC to perform mappings between different gene identifiers

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