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Username    ddomingof
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24 projects

pubmed2pdf

Last released

A Python package to download PDFs from OA publications in PubMed

clep

Last released

A Hybrid Data and Knowledge Driven Framework for Generating Patient Representations

pykeen

Last released

A package for training and evaluating multimodal knowledge graph embeddings

drug2ways

Last released

Reasoning over polar paths in biological networks for drug discovery applications

pybel

Last released

Parsing, validation, compilation, and data exchange of Biological Expression Language (BEL)

stonkgs

Last released

Sophisticated Transformers for Biomedical Text and Knowledge Graph Data

pybel-tools

Last released

A cool pool of tools for BEL

compath-resources

Last released

ComPath Resource Utilities

bio2bel-kegg

Last released

A package for converting KEGG gene sets into BEL

compath

Last released

A web application for exploring and comparing the overlaps across pathway resources

bio2bel-msig

Last released

A package for converting MSigDB gene sets into BEL

diffupath

Last released

Compute diffusion scores over networks from biological databases

diffupy

Last released

Compute diffusion scores over networks

pybel-jupyter

Last released

A PyBEL extension for Jupyter notebooks

pathme

Last released

Harmonizing pathway databases using Biological Expression Language (BEL)

compath-utils

Last released

A utilities package for ComPath

bio2bel-hgnc

Last released

A package for converting HGNC to BEL

pathway-forte

Last released

A Python package for comparing the effect of pathway database choice in functional enrichment and classification methods

ratvec

Last released

Generating dense embeddings for proteins using kernel PCA

pathme-viewer

Last released

A plugin for PathMe that allows to explore overlaps across pathway databases

bio2bel-wikipathways

Last released

A package for converting Wikipathways to BEL

bio2bel-chebi

Last released

A package for converting ChEBI to BEL

bio2bel-reactome

Last released

A wrapper around Reactome RESTful API

compath-hgnc

Last released

A package that wraps PyHGNC to perform mappings between different gene identifiers

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