Skip to main content

A Python package to download PDFs from OA publications in PubMed

Project description

A Python package to download PDFs from OA publications in PubMed. The underlying code is forked from https://github.com/billgreenwald/Pubmed-Batch-Download. Downloaded files are located by default in your personal folder under the ‘pubmed2pdf’ directory.

Installation

pubmed2pdf can be installed from PyPI with the following command in your terminal:

$ python3 -m pip install pubmed2pdf

The latest code can be installed from GitHub with:

$ python3 -m pip install git+https://github.com/ddomingof/PubMed2PDF.git

For developers, the code can be installed with:

$ git clone https://github.com/ddomingof/PubMed2PDF.git
$ cd PubMed2PDF
$ python3 -m pip install -e .

How to Use

PubMed2PDF works by simply typing the list of PubMed identifiers in your command line interface or reading them from a file.

Example from file:

$ python3 -m pubmed2pdf pdf --pmidsfile="/my/path/to/the/file"
$ python3 -m pubmed2pdf pdf --pmids="123, 1234, 12345"

Run the help command to see all functionalities

$ python3 -m pubmed2pdf pdf --help

Project details


Release history Release notifications

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for pubmed2pdf, version 0.0.1
Filename, size File type Python version Upload date Hashes
Filename, size pubmed2pdf-0.0.1.tar.gz (6.0 kB) File type Source Python version None Upload date Hashes View hashes

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN SignalFx SignalFx Supporter DigiCert DigiCert EV certificate StatusPage StatusPage Status page