bioapi-sdk
Python SDK client for the BioAPI genomics REST service.
The distribution package is named bioapi-sdk and the import package is bioapi_sdk.
Installation
pip install bioapi-sdk
Usage
from bioapi_sdk import gene_symbols, information_of_genes
symbols = gene_symbols(["ENSG00000141510", "7157"])
genes = information_of_genes(["TP53"])
By default, requests are sent to https://bioapi.multiomix.org. You can change
the server per call with base_url= or globally with the BIOAPI_BASE_URL
environment variable.
from bioapi_sdk import gene_symbols
symbols = gene_symbols(["TP53"], base_url="http://localhost:5000")
MCP server
The SDK package also includes a BioAPI MCP server for LLM clients. Install the MCP extra to include the MCP runtime dependency:
pip install "bioapi-sdk[mcp]"
After installation, run the server over stdio with:
bioapi-mcp
Development
Build the package from this directory:
python -m build
The core SDK intentionally depends only on requests at runtime. The MCP server dependencies are installed only with the mcp extra.
1 maintainer
Metadata
1 maintainer
Release files for bioapi-sdk 0.1.0
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| File | Size | Uploaded | Provenance | Actions |
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| bioapi_sdk-0.1.0.tar.gz | 13.3 kB | Without provenance | Details for bioapi_sdk-0.1.0.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| bioapi_sdk-0.1.0-py3-none-any.whl | Python 3 | none | any | Details for bioapi_sdk-0.1.0-py3-none-any.whl |
Total release size: 27.5 kB
Release files / bioapi_sdk-0.1.0.tar.gz
| Download URL | bioapi_sdk-0.1.0.tar.gz |
|---|---|
| Size | 13.3 kB |
| Tags | Source |
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Release files / bioapi_sdk-0.1.0-py3-none-any.whl
| Download URL | bioapi_sdk-0.1.0-py3-none-any.whl |
|---|---|
| Size | 14.2 kB |
| Tags | Python 3 |
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