bioapi-sdk 0.1.0

Python SDK client for BioAPI genomics REST endpoints.

bioapi-sdk

Python SDK client for the BioAPI genomics REST service.

The distribution package is named bioapi-sdk and the import package is bioapi_sdk.

Installation

pip install bioapi-sdk

Usage

from bioapi_sdk import gene_symbols, information_of_genes

symbols = gene_symbols(["ENSG00000141510", "7157"])
genes = information_of_genes(["TP53"])

By default, requests are sent to https://bioapi.multiomix.org. You can change the server per call with base_url= or globally with the BIOAPI_BASE_URL environment variable.

from bioapi_sdk import gene_symbols

symbols = gene_symbols(["TP53"], base_url="http://localhost:5000")

MCP server

The SDK package also includes a BioAPI MCP server for LLM clients. Install the MCP extra to include the MCP runtime dependency:

pip install "bioapi-sdk[mcp]"

After installation, run the server over stdio with:

bioapi-mcp

Development

Build the package from this directory:

python -m build

The core SDK intentionally depends only on requests at runtime. The MCP server dependencies are installed only with the mcp extra.