biocognia-markers
The marker graph that SCIMAP Pro, Plexora and other BioCognia products share.
- Nodes: markers and cell families.
- Edges: what is known about them: exceptions, exclusions, subsets, carriers and co-expression.
- Evidence: the evidence behind each node and edge.
- Verification: an item counts as verified only when a machine has found every part of it in
its source (
biocognia-markers verify).
import biocognia_markers as bm
graph = bm.load() # the shipped graph, with the user's overlay laid over it
graph.resolve(["CD3e", "PD-1"])
graph.edges_of("m:pd1")
To add to the graph, an agent follows the skill biocognia-marker-graph
(src/biocognia_markers/skills/marker-graph/SKILL.md). tools/migrate.py built the first graph
from SCIMAP Pro's rule library and Plexora's vocabulary. Where those two sources disagree is
listed in MIGRATION_REPORT.md.
1 maintainer
Metadata
1 maintainer
Release files for biocognia-markers 0.1.0
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| biocognia_markers-0.1.0.tar.gz | 276.9 kB | Without provenance | Details for biocognia_markers-0.1.0.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| biocognia_markers-0.1.0-py3-none-any.whl | Python 3 | none | any | Details for biocognia_markers-0.1.0-py3-none-any.whl |
Total release size: 510.5 kB
Release files / biocognia_markers-0.1.0.tar.gz
| Download URL | biocognia_markers-0.1.0.tar.gz |
|---|---|
| Size | 276.9 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Release files / biocognia_markers-0.1.0-py3-none-any.whl
| Download URL | biocognia_markers-0.1.0-py3-none-any.whl |
|---|---|
| Size | 233.7 kB |
| Tags | Python 3 |
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