Utilities for BiocPy
Motivation
This repository contains a variety of simple utilities for the BiocPy project, mostly convenient aspects of R that aren't provided by base Python. The aim is to simplify development of higher-level packages like scranpy and singler that would otherwise have to implement these methods individually.
Available utilities
match
import biocutils
biocutils.match(["A", "C", "E"], ["A", "B", "C", "D", "E"])
## [0, 2, 4]
factor
import biocutils
biocutils.factorize(["A", "B", "B", "A", "C", "D", "C", "D"])
## (['A', 'B', 'C', 'D'], [0, 1, 1, 0, 2, 3, 2, 3])
intersect
import biocutils
biocutils.intersect(["A", "B", "C", "D"], ["D", "A", "E"])
## ['A', 'D']
union
import biocutils
biocutils.union(["A", "B", "C", "D"], ["D", "A", "E"])
## ['A', 'B', 'C', 'D', 'E']
subset
import biocutils
biocutils.subset(["A", "B", "C", "D", "E"], [0, 2, 4])
## ['A', 'C', 'E']
import numpy as np
y = np.array([10, 20, 30, 40, 50])
biocutils.subset(y, [0, 2, 4])
## array([10, 30, 50])
is_list_of_type
Checks if all elements of a list or tuple are of the same type.
import biocutils
import numpy as np
x = [np.random.rand(3), np.random.rand(3, 2)]
biocutils.is_list_of_type(x, np.ndarray)
## True
and many more. Check out the documentation for more information.
Release files for biocutils 0.5.0
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Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| biocutils-0.5.0.tar.gz | 60.5 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| biocutils-0.5.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 119.3 kB
Release files / biocutils-0.5.0.tar.gz
| Download URL | biocutils-0.5.0.tar.gz |
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| Size | 60.5 kB |
| Tags | Source |
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