Lightweight image IO tools for BioImageFlow
Project description
bioimageflow-io-tools
Optional BioImageFlow package for image ingestion, metadata inspection, axis validation, slicing, lightweight format conversion, and explicit bioio/plugin-backed conversion.
Core libraries for lightweight tools are imageio, NumPy, tifffile, and the package's minimal OME-Zarr writer.
BioIOConvertImage declares a separate bioio/plugin-backed runtime for broad formats such as CZI and OME-Zarr.
Tools
ReadImageMetadataValidateImageLayoutConvertImageFormatBioIOConvertImageConvertToOmeTiffConvertToOmeZarrSelectSceneSelectTimepointSelectChannelSelectZRangeSelectDimensions
Use BioIOConvertImage for microscopy formats that need scene, channel, Z, timepoint, or dimension-order handling.
Use ConvertImageFormat for simple imageio/tifffile conversions.
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