bioimageflow
Main-process orchestrator for BioImageFlow workflows.
This package builds workflow DAGs, resolves column bindings, executes tools, and publishes cache records and run views.
Worker-safe tool authoring primitives live in bioimageflow-core; optional domain tools live in separate bioimageflow-*-tools packages.
Install:
pip install bioimageflow
Install the optional distributed runtime when using ParslEngine:
pip install "bioimageflow[parsl]"
Install the PSI/J cluster orchestrator launcher with Parsl:
pip install "bioimageflow[parsl,psij]"
For workspace development, use the repository root:
uv sync
uv run pytest packages/bioimageflow tests
Wetlands worker environments install bioimageflow-core independently from the orchestrator environment.
By default WetlandsEnvManager injects bioimageflow-core==<installed version> for reproducible runtime environments.
Set BIOIMAGEFLOW_USE_LOCAL_CORE=1 while developing from a source checkout to inject the local editable bioimageflow-core project into newly created worker environments.
1 maintainer
Metadata
1 maintainer
Release files for bioimageflow 0.7.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| bioimageflow-0.7.1.tar.gz | 382.2 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| bioimageflow-0.7.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 867.6 kB
Release files / bioimageflow-0.7.1.tar.gz
| Download URL | bioimageflow-0.7.1.tar.gz |
|---|---|
| Size | 382.2 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
eeb061bcd7e52ad85ddc8512672f075513001910f7903746125f99d57a3a0a05
|
|
BLAKE2b-256 checksum How to use checksums |
a40dff68b3cd46f4c5a0ea17a6b1c421f063dbee58e33ba598a25f08a6b28891
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
uv/0.10.9 {"installer":{"name":"uv","version":"0.10.9","subcommand":["publish"]},"python":null,"implementation":{"name":null,"version":null},"distro":{"name":"Ubuntu","version":"24.04","id":"noble","libc":null},"system":{"name":null,"release":null},"cpu":null,"openssl_version":null,"setuptools_version":null,"rustc_version":null,"ci":true}
|
Release files / bioimageflow-0.7.1-py3-none-any.whl
| Download URL | bioimageflow-0.7.1-py3-none-any.whl |
|---|---|
| Size | 485.4 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
ee34f6cd2cc4bce890e4651a327b4a5508fd05229e9b3d45aff43c6d058039f1
|
|
BLAKE2b-256 checksum How to use checksums |
991beac462367ad2d8e68d7cfa29c34284c5da4aebff07419fed0bdbc9c377ed
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
uv/0.10.9 {"installer":{"name":"uv","version":"0.10.9","subcommand":["publish"]},"python":null,"implementation":{"name":null,"version":null},"distro":{"name":"Ubuntu","version":"24.04","id":"noble","libc":null},"system":{"name":null,"release":null},"cpu":null,"openssl_version":null,"setuptools_version":null,"rustc_version":null,"ci":true}
|
