bioio-types

Typing, base classes, and more for BioIO projects.

Installation

Stable Release: pip install bioio-types
Development Head: pip install git+https://github.com/bioio-devs/bioio-types.git

Quickstart

from bioio_types.reader import Reader

class CustomTiffReader(Reader):
    # Your code here

from typing import List

from bioio_types.reader_metadata import ReaderMetadata as BaseReaderMetadata

class ReaderMetadata(BaseReaderMetadata):
    @staticmethod
    def get_supported_extensions() -> List[str]:
        return ["tif", "tiff"]

    @staticmethod
    def get_reader() -> base_image_reader.reader.Reader:
        from .custom_tiff_reader import CustomTiffReader

        return CustomTiffReader

Documentation

For full package documentation please visit bioio-devs.github.io/bioio-types.

Development

See CONTRIBUTING.md for information related to developing the code.

BSD License