biokeen 0.0.1

BioKEEN (KnowlEdge EmbeddiNgs) is a package for training and evaluating biological knowledge graph embeddings

BioKEEN is a package for training and evaluating biological knowledge graph embeddings built on PyKEEN.

Currently, the framework is under heavy development.

Installation

1. BioKEEN can be installed with the following commands:

python3 -m pip install git+https://github.com/SmartDataAnalytics/BioKEEN.git@master

2. or in editable mode with:

$ git clone https://github.com/SmartDataAnalytics/BioKEEN.git biokeen
$ cd biokeen
$ python3 -m pip install -e .

How to Use

To start BioKEEN, please run the following command:

biokeen

or alternatively:

python3 -m biokeen

then the command line interface will assist you to configure your experiments.