The Biological Observation Matrix (BIOM) format
The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing counts of observations (e.g., OTUs, KO categories, lipid types) in one or more biological samples (e.g., microbiome samples, genomes, metagenomes).
Further details can be found at http://biom-format.org.
Installation
The easiest way to install the latest version of BIOM-Format is through conda-forge:
$ conda install -c conda-forge biom-format
Alternatively, you can install the latest version through PyPI:
$ pip install biom-format
Getting help
To get help with biom, please open an issue on the Github tracker.
2 maintainers
Metadata
2 maintainers
Release files for biom-format 2.1.18
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| biom_format-2.1.18.tar.gz | 11.7 MB | Details |
Built distributions (wheels)
Total release size: 373.6 MB
Release files / biom_format-2.1.18.tar.gz
| Download URL | biom_format-2.1.18.tar.gz |
|---|---|
| Size | 11.7 MB |
| Tags | Source |
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Release files / biom_format-2.1.18-cp314-cp314-win_amd64.whl
| Download URL | biom_format-2.1.18-cp314-cp314-win_amd64.whl |
|---|---|
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Release files / biom_format-2.1.18-cp314-cp314-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl
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Release files / biom_format-2.1.18-cp314-cp314-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl
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Release files / biom_format-2.1.18-cp314-cp314-macosx_11_0_arm64.whl
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Release files / biom_format-2.1.18-cp314-cp314-macosx_10_15_x86_64.whl
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No |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
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Release files / biom_format-2.1.18-cp39-cp39-win_amd64.whl
| Download URL | biom_format-2.1.18-cp39-cp39-win_amd64.whl |
|---|---|
| Size | 11.9 MB |
| Tags | CPython 3.9 Windows x86-64 |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
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Release files / biom_format-2.1.18-cp39-cp39-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl
| Download URL | biom_format-2.1.18-cp39-cp39-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl |
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| Size | 12.3 MB |
| Tags | CPython 3.9 Linux glibc 2.17+ ARM64 Linux glibc 2.28+ ARM64 |
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| Uploaded via |
twine/7.0.0 CPython/3.13.14
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Release files / biom_format-2.1.18-cp39-cp39-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl
| Download URL | biom_format-2.1.18-cp39-cp39-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl |
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| Size | 12.3 MB |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
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Release files / biom_format-2.1.18-cp39-cp39-macosx_11_0_arm64.whl
| Download URL | biom_format-2.1.18-cp39-cp39-macosx_11_0_arm64.whl |
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| Size | 11.9 MB |
| Tags | CPython 3.9 macOS 11.0+ ARM64 |
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No |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
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Release files / biom_format-2.1.18-cp39-cp39-macosx_10_9_x86_64.whl
| Download URL | biom_format-2.1.18-cp39-cp39-macosx_10_9_x86_64.whl |
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| Size | 11.9 MB |
| Tags | CPython 3.9 macOS 10.9+ x86-64 |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
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