Basic biological entities, coupled to public ontologies [`source <https://github.com/laminlabs/bionty/blob/main/bionty/models.py>`__].
Project description
bionty: Basic biological entities
- Access >20 public ontologies such as Gene, Protein, CellMarker, ExperimentalFactor, CellType, CellLine, Tissue, …
- Create records from entries in public ontologies using
.from_source(). - Access full underlying public ontologies via
.public()to search & bulk-create records. - Create in-house ontologies by extending public ontologies using hierarchical relationships among records (
.parents). - Use
.synonymsand.abbrto manage synonyms. - Safeguards against typos & duplications
- Ontology versioning
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