26 projects
lamindb
A data framework for biology.
ehrdata
A Python package for EHR data
bionty
Basic biological entities, coupled to public ontologies [`source <https://github.com/laminlabs/bionty/blob/main/bionty/models.py>`__].
lamin_utils
Lamin Utils.
wetlab
Basic wetlab entities [`source <https://github.com/laminlabs/wetlab/blob/main/wetlab/models.py>`__].
scirpy
Python library for single-cell adaptive immune receptor repertoire (AIRR) analysis
ehrapy
Electronic Health Record Analysis with Python.
fknni
Fast implementations of KNN imputation.
infercnvpy
Infercnv is a scalable python library to infer copy number variation (CNV) events from single cell transcriptomics data. It is heavliy inspired by InferCNV, but plays nicely with scanpy and is much more scalable.
omop
OMOP Common Data Model [`source <https://github.com/laminlabs/omop/blob/main/omop/models.py>`__].
ourprojects
Manage projects & teams.
lamin_spatial
Manage spatial data using LaminDB.
formulaic-contrasts
Build contrasts for models defined with formulaic
cellxgene_lamin
Manage cellxgene metadata using LaminDB.
lnschema_bionty
Registries for basic biological entities, coupled to public ontologies.
bionty-base
Bionty.
sparsecca
A full implementation of sparse CCA.
sc-toolbox
A collection of project templates and useful code snippets for single-cell data analysis with Scanpy.
cookietemple
A cookiecutter based project template creation tool supporting several domains and languages with advanced linting, syncing and standardized workflows to get your project kickstarted in no time.
pypi-latest
Verify that currently installed version is the latest one released on PyPI and update it if not.
mlf-core
Reproducible machine learning pipelines using mlflow.
lcep-package
Python package for lcep.
system-intelligence
Query your system for all hardware and software related information.
qube
QBiC's internal project template collection.
SEIR
SEIR modelling of covid19
promoe
Protonize a selection of atoms of protein binding sites.
