Basic biological entities, coupled to public ontologies [`source <https://github.com/laminlabs/bionty/blob/main/bionty/models.py>`__].

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for Koncopd from gravatar.com Koncopd Avatar for lamindev from gravatar.com lamindev Avatar for sunnyosun from gravatar.com sunnyosun

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: Apache Software License
  • Author: Lamin Labs
  • Requires: Python <3.14, >=3.10
  • Provides-Extra: dev
Classifiers
Report project as malware

Project description

Stars pypi

bionty: Registries for biological ontologies

  • Access >20 public ontologies such as Gene, Protein, CellMarker, ExperimentalFactor, CellType, CellLine, Tissue, …
  • Create records from entries in public ontologies using .from_source().
  • Access full underlying public ontologies via .public() to search & bulk-create records.
  • Create in-house ontologies by extending public ontologies using hierarchical relationships among records (.parents).
  • Use .synonyms and .abbr to manage synonyms.
  • Safeguards against typos & duplications.
  • Manage multiple ontology versions via bionty.Source.

Read the docs.

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for Koncopd from gravatar.com Koncopd Avatar for lamindev from gravatar.com lamindev Avatar for sunnyosun from gravatar.com sunnyosun

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: Apache Software License
  • Author: Lamin Labs
  • Requires: Python <3.14, >=3.10
  • Provides-Extra: dev
Classifiers

Release history Release notifications | RSS feed

2.4.0

2.3.1

2.3.0

2.3a1 pre-release

This version

2.2.1

2.2.0

2.1.0

2.0.0

2.0a4 pre-release

2.0a3 pre-release

2.0a2 pre-release

2.0a1 pre-release

1.10.0

1.9.1

1.9.0

1.8.1

1.8.0

1.7.0

1.7a1 pre-release

1.6.1

1.6.1rc1 pre-release

1.6.0

1.5.0

1.4.2

1.4.1

1.4.0

1.4a1 pre-release

1.3.2

1.3.1

1.3.0

1.2.1

1.2.0

1.2a1 pre-release

1.1.2

1.1.1

1.1.0

1.0.0

1.0a5 pre-release

1.0a1 pre-release

0.53.2

0.53.1

0.53.0

0.52.1

0.52.0

0.51.2

0.51.1

0.51.0

0.50.2

0.50.1

0.50.0

0.49.1

0.49.0

0.48.3

0.48.2

0.48.1

0.48.0

0.47.1

0.47.0

0.46.0

0.45.0

0.44.3

0.44.2

0.44.1

0.44.0

0.43.1

0.43.0

0.42.11

0.42.10

0.42.9

0.42.8

0.42.7

0.42.6

0.42.5

0.42.4

0.42.3

0.42.2

0.42.1

0.42.0

0.41.1

0.41.0

0.40.3

0.40.2

0.40.1

0.40.0

0.36.0

0.35.2

0.35.1

0.35.0

0.34.3

0.34.2

0.34.1

0.34.0

0.33.1

0.33.0

0.32.0

0.31.2

0.31.1

0.31.0

0.30.3

0.30.2

0.30.1

0.30.0

0.29.0

0.28.0

0.27.0

0.26.0

0.25.2

0.25.1

0.25.0

0.24.2

0.24.1

0.24.0

0.23.1

0.23.0

0.22.0

0.21.4

0.21.3

0.21.2

0.21.1

0.21.0

0.20.0

0.19.1

0.19.0

0.18.1

0.18.0

0.17.0

0.17a3 pre-release

0.17a2 pre-release

0.17a1 pre-release

0.16.0

0.15.1

0.15.0

0.14.0

0.13.5

0.13.4

0.13.3

0.13.2

0.13.1

0.13.0

0.12.1

0.12.0

0.11.6

0.11.5

0.11.4

0.11.3

0.11.2

0.11.1

0.11.0

0.10.1

0.10.0

0.9.0

0.9.0rc1 pre-release

0.8.1

0.8.0

0.8rc3 pre-release

0.8rc2 pre-release

0.8rc1 pre-release

0.7.0

0.6.5

0.6.4

0.6.3

0.6.2

0.6.1

0.6.0

0.5.7

0.5.6

0.5.5

0.5.4

0.5.3

0.5.2

0.5.1

0.5.0

0.4.3

0.4.2

0.4.1

0.4.0

0.3.2

0.3.1

0.3.0

0.2.5

0.2.4

0.2.3

0.2.2

0.2.0

0.1.11

0.1.10

0.1.9

0.1.8

0.1.7

0.1.6

0.1.5

0.1.4

0.1.3

0.1.2

0.1.1

0.1.0

0.1a3 pre-release

0.1a2 pre-release

0.1a1 pre-release

0.0.6

0.0.5

0.0.4

0.0.3

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

bionty-2.2.1.tar.gz (82.4 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

bionty-2.2.1-py3-none-any.whl (83.5 kB view details)

Uploaded Python 3

File details

Details for the file bionty-2.2.1.tar.gz.

File metadata

  • Download URL: bionty-2.2.1.tar.gz
  • Upload date:
  • Size: 82.4 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: python-requests/2.32.5

File hashes

Hashes for bionty-2.2.1.tar.gz
Algorithm Hash digest
SHA256 7f2d2271515ac3da67b1e4cba4703415a545c0bc73a4ac9699f02be1b4adc700
MD5 56a5e048fe8dd95c1be3161c56abb7f9
BLAKE2b-256 d1d212b3766e4bee7491cdcce672ee3541a68b5aa1a200288f244ec97d1c325b

See more details on using hashes here.

File details

Details for the file bionty-2.2.1-py3-none-any.whl.

File metadata

  • Download URL: bionty-2.2.1-py3-none-any.whl
  • Upload date:
  • Size: 83.5 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: python-requests/2.32.5

File hashes

Hashes for bionty-2.2.1-py3-none-any.whl
Algorithm Hash digest
SHA256 1ae3b409141425fa770bdc29a13ab332bc970d0d013b84d4eff83e4732339657
MD5 ced189c1dfdfecfdec4f8a7343c54857
BLAKE2b-256 085a8a3765df9ab9af5d6e18371b32058316b241ee905fc8736b7c4cf2c4c4e7

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page