Utilities for building standardized command-line interfaces for biosimulation tools
Project description
BioSimulators utils
Utilities for building standardized command-line interfaces for biosimulation tools that support the Simulation Experiment Description Markup Language (SED-ML) and the COMBINE/OMEX format.
Contents
Installation
Requirements
Python >= 3.7
pip
Install latest release from PyPI
pip install biosimulators-utils
Install latest revision from GitHub
pip install git+https://github.com/biosimulators/Biosimulators_utils.git#biosimulators_utils
API documentation
API documentation is available here.
License
This package is released under the MIT license.
Development team
This package was developed by the Karr Lab at the Icahn School of Medicine at Mount Sinai in New York and the Center for Reproducible Biomedical Modeling.
Contributing to BioSimulators utils
We enthusiastically welcome contributions to BioSimulators utils! Please see the guide to contributing and the developer’s code of conduct.
Acknowledgements
This work was supported by National Institutes of Health award P41EB023912.
Questions and comments
Please contact the BioSimulators Team with any questions or comments.
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