biotree_tools

Collection of bioinformatics tools related to alignments and phylogenetic trees

Installation

conda install -c mmariotti -c bioconda -c etetoolkit biotree_tools

alignment_tools utility to manipulate (reformat, subset, trim...) multiple sequence alignments
tree_tools utility to manipulate (rename, prune, set output...) trees in newick format
phylo_context given protein sequences, build and draw a tree to identify phylogenetic (sub)families
show_tree flexible tool to visualize an input protein tree in newick format

Run any tool with option -h to display its usage.

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

biotree_tools-0.0.6.tar.gz (142.2 kB view details)

Uploaded Apr 24, 2023 Source

If you're not sure about the file name format, learn more about wheel file names.

The dropdown lists show the available interpreters, ABIs, and platforms. Enable javascript to be able to filter the list of wheel files.

Uploaded Apr 24, 2023 Python 3

Details for the file biotree_tools-0.0.6.tar.gz.

Download URL: biotree_tools-0.0.6.tar.gz
Upload date: Apr 24, 2023
Size: 142.2 kB
Tags: Source
Uploaded using Trusted Publishing? No
Uploaded via: twine/3.1.1 pkginfo/1.4.2 requests/2.22.0 setuptools/45.2.0 requests-toolbelt/0.8.0 tqdm/4.30.0 CPython/3.8.10

Hashes for biotree_tools-0.0.6.tar.gz
Algorithm	Hash digest
SHA256	`38420c883f73ad2a3b4a7bbb9d8abf5aced6cd3eacda41da51a4e2cebcc2168a`
MD5	`296ae3ecbf19626b3822cb996fbabe09`
BLAKE2b-256	`90118ff8477a57aac8063fa567c29cdfafb02eb383f36481a98a097913da62f2`

Details for the file biotree_tools-0.0.6-py3-none-any.whl.

Download URL: biotree_tools-0.0.6-py3-none-any.whl
Upload date: Apr 24, 2023
Size: 145.1 kB
Tags: Python 3
Uploaded using Trusted Publishing? No
Uploaded via: twine/3.1.1 pkginfo/1.4.2 requests/2.22.0 setuptools/45.2.0 requests-toolbelt/0.8.0 tqdm/4.30.0 CPython/3.8.10