16 projects
twinstop
twinstop identifies selenoproteins in close related transcriptomes
pyranges1
GenomicRanges for Python.
pyranges-plot
'Genomic intervals data visualization package for dataframe objects generated with PyRanges.'
orf-tools
Tools to work with open reading frames (ORFs)
pyranges
GenomicRanges for Python.
pyaln
Read, process, write multiple sequence alignments in Python
selenoprofiles4
Gene finding pipeline for selenoprotein and selenocysteine machinery
easybioinfo
Convenient python functions for bioinformatics
extend-orfs-pyranges
Fork of Joan Pallares extend_orf based on pyranges
file-chunk-iterators
Python classes to iterate through files in chunks
secmarker
secmarker description
easyterm
convenient python functions for everyday use of terminal
qjob
Utility to split shell commands into jobs, then submit them for computation to a queue of a SGE or Slurm cluster.
biotree-tools
Collection of bioinformatics tools related to alignments and phylogenetic trees
ncbi-db
Collection of scripts that wrap the Entrez Bio python module, to query and download portions of NCBI databases
ensembl-assembly
Utility to search and download Ensembl data such as genome assemblies and gene annotations
