selenoprofiles4
Profile-based gene finding pipeline specialized in selenoprotein and selenocysteine machinery.
For installation instructions and documentation, visit https://selenoprofiles4.readthedocs.io/.
Bug report
Please report any bugs at the github issues page.
Citation
Ticó M, Sullivan E, Guigó R, Mariotti M (2026) Overcoming the widespread flaws in the annotation of vertebrate selenoprotein genes in public databases. PLoS Comput Biol. 2026 Jan 12;22(1):e1013885. doi: 10.1371/journal.pcbi.1013885
Mariotti M, Guigó R (2010) Selenoprofiles: profile-based scanning of eukaryotic genome sequences for selenoprotein genes. Bioinformatics. 2010 Nov 1;26(21):2656-63.
Santesmasses D, Mariotti M, Guigó R (2018) Selenoprofiles: A Computational Pipeline for Annotation of Selenoproteins. Methods Mol Biol. 2018;1661:17-28.
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file selenoprofiles4-4.5.8.tar.gz.
File metadata
- Download URL: selenoprofiles4-4.5.8.tar.gz
- Upload date:
- Size: 270.1 kB
- Tags: Source
- Uploaded using Trusted Publishing? Yes
- Uploaded via:
twine/6.1.0 CPython/3.13.12
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
9d2a30d75cbdf28d035428ec8f08cc0cd4d52a0658304c039e8143d60431d85e
|
|
| MD5 |
a44e375c4fa8560f468e8972bf742c4b
|
|
| BLAKE2b-256 |
66879623c9064a4029eea8dc24a5ae97162eab20c97112b2d4388668b8b59078
|
Provenance
The following attestation bundles were made for selenoprofiles4-4.5.8.tar.gz:
Publisher:
build_and_upload.yml on marco-mariotti/selenoprofiles4
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
selenoprofiles4-4.5.8.tar.gz -
Subject digest:
9d2a30d75cbdf28d035428ec8f08cc0cd4d52a0658304c039e8143d60431d85e - Sigstore transparency entry: 1943497970
- Sigstore integration time:
-
Permalink:
marco-mariotti/selenoprofiles4@ff3c786b612aae84db084852af5474b109273061 -
Branch / Tag:
refs/heads/main - Owner: https://github.com/marco-mariotti
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
build_and_upload.yml@ff3c786b612aae84db084852af5474b109273061 -
Trigger Event:
workflow_dispatch
-
Statement type:
File details
Details for the file selenoprofiles4-4.5.8-py3-none-any.whl.
File metadata
- Download URL: selenoprofiles4-4.5.8-py3-none-any.whl
- Upload date:
- Size: 293.4 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? Yes
- Uploaded via:
twine/6.1.0 CPython/3.13.12
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
d8e1debad12f332ba72e2a5cac5233f74b129136fcce3028666a9b16ac047b3e
|
|
| MD5 |
94786292fbafd13b048055a5b122c49b
|
|
| BLAKE2b-256 |
06151c7381532a30288820e7faa9d23d2f80c36b0016bc0475b4e886b7193723
|
Provenance
The following attestation bundles were made for selenoprofiles4-4.5.8-py3-none-any.whl:
Publisher:
build_and_upload.yml on marco-mariotti/selenoprofiles4
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
selenoprofiles4-4.5.8-py3-none-any.whl -
Subject digest:
d8e1debad12f332ba72e2a5cac5233f74b129136fcce3028666a9b16ac047b3e - Sigstore transparency entry: 1943498075
- Sigstore integration time:
-
Permalink:
marco-mariotti/selenoprofiles4@ff3c786b612aae84db084852af5474b109273061 -
Branch / Tag:
refs/heads/main - Owner: https://github.com/marco-mariotti
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
build_and_upload.yml@ff3c786b612aae84db084852af5474b109273061 -
Trigger Event:
workflow_dispatch
-
Statement type:
