Gene finding pipeline for selenoprotein and selenocysteine machinery

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selenoprofiles4

Profile-based gene finding pipeline specialized in selenoprotein and selenocysteine machinery.

For installation instructions and documentation, visit https://selenoprofiles4.readthedocs.io/.

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Citation

Ticó M, Sullivan E, Guigó R, Mariotti M (2026) Overcoming the widespread flaws in the annotation of vertebrate selenoprotein genes in public databases. PLoS Comput Biol. 2026 Jan 12;22(1):e1013885. doi: 10.1371/journal.pcbi.1013885

Mariotti M, Guigó R (2010) Selenoprofiles: profile-based scanning of eukaryotic genome sequences for selenoprotein genes. Bioinformatics. 2010 Nov 1;26(21):2656-63.

Santesmasses D, Mariotti M, Guigó R (2018) Selenoprofiles: A Computational Pipeline for Annotation of Selenoproteins. Methods Mol Biol. 2018;1661:17-28.

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