ensembl_assembly

Search and download Ensembl data such as genome assemblies and gene annotations

This program will produce a tabular-like format with the metadata for the genomes matching user criteria. It may also download desired data to a local folder.

Installation

Install through conda:

conda install -c mmariotti ensembl_assembly

Or, alternatively, through pip:

pip install ensembl_assembly

Usage

By default, the program will show information for all available genome assemblies (most recent release). To see options, run with:

ensembl_assembly.py -h

Dependencies

• pandas
• easyterm

These are automatically installed through the conda or pip installation procedure.