Biolink Model Toolkit: A Python API for working with the Biolink Model

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  • License: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication, Other/Proprietary License (BSD)
  • Author: Sierra Taylor Moxon
  • Tags schema , linked data , data modeling , biolink , api
  • Requires: Python <4.0, >=3.9
  • Provides-Extra: docs
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Project description

Python PyPI

Biolink Model Toolkit

Biolink Model Toolkit (BMT): A Python API for working with the Biolink Model.

BMT provides utility functions to look up Biolink Model for classes, relations, and properties based on Biolink CURIEs or external CURIEs that have been mapped to Biolink Model.

Note: Each release of BMT is pinned to a specific version of the Biolink Model to ensure consistency.

Usage

BMT provides convenience methods to operate on the Biolink Model.

Using this toolkit you can,

  • Get Biolink Model elements corresponding to a given Biolink class or slot name
  • Get Biolink Model elements corresponding to a given external CURIE/IRI
  • Get ancestors for a given Biolink Model element
  • Get descendants for a given Biolink Model element
  • Get parent for a given Biolink Model element
  • Get children for a given Biolink Model element
  • Check whether a given Biolink Model element is part of a specified subset

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for cmungall from gravatar.com cmungall Avatar for deepakunni3 from gravatar.com deepakunni3 Avatar for smoxon from gravatar.com smoxon

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication, Other/Proprietary License (BSD)
  • Author: Sierra Taylor Moxon
  • Tags schema , linked data , data modeling , biolink , api
  • Requires: Python <4.0, >=3.9
  • Provides-Extra: docs
Classifiers

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