brainbow 0.0.10

Script for visualizing ICA/ROI brain parcellation

brainbow

Script for visualizing ICA/ROI brain parcellation

Requirements

pip install brainbow

Examples

brainbow --nifti nifti.nii --anat anat.nii

Options for brainbow

• --nifti

  • path to the 4D nifti to convert to images
  • required

• --anat

  • path to the anatomical image to use as underlay
  • required

• --output

  • Name of the output file(s)
  • default - brainbow-output.png/svg
  • You can specify the exact extension (png or svg). If none is provided, both extensions will be used.

• --dir

  • name for the directory where to save results
  • can be nested (e.g., final/most_final)
  • default - directory where brainbow is executed

• --sign

  • choices: pos, neg, both
  • used for filtering only positive, only negative, or both components
  • default - both

• --thr

  • threshold value for component significance
  • default - 2.0

• --dpi

  • dpi for png output
  • default - 300