CaMAP
Calcium imaging mapping and analysis pipeline. Extracts neural events from calcium traces, aligns them with animal behavior, and computes spatial tuning metrics including rate maps, spatial information, stability, and place-cell classification.
Alpha-stage in
0.x— APIs may change between minor releases.
System requirements
Supported operating systems and Python versions are shown on
PyPI, and dependencies are listed in
pyproject.toml. No non-standard hardware is required.
Install
pip install camap
Or clone the repository for the demo data and development:
git clone https://github.com/miniscope/CaMAP.git
cd CaMAP
pip install .
oasis-deconv is required for the deconvolution step; see
Installation for the
recommended install path. A typical install takes below a few minutes on a
normal desktop computer.
Demo
See the Demo for a
functionality demo on the small sample data included in tests/assets.
Documentation
To run on your own data, see Quickstart.
License
AGPL-3.0. See LICENSE.
1 maintainer
Metadata
1 maintainer
Release files for camap 0.1.7
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| camap-0.1.7.tar.gz | 10.1 MB | With provenance | Details for camap-0.1.7.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| camap-0.1.7-py3-none-any.whl | Python 3 | none | any | Details for camap-0.1.7-py3-none-any.whl |
Total release size: 10.2 MB
Release files / camap-0.1.7.tar.gz
| Download URL | camap-0.1.7.tar.gz |
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| Size | 10.1 MB |
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| Tags | Python 3 |
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