casanovo 4.1.0

De novo mass spectrometry peptide sequencing with a transformer model

Casanovo

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

If you use Casanovo in your work, please cite the following publications:

• Yilmaz, M., Fondrie, W. E., Bittremieux, W., Oh, S. & Noble, W. S. De novo mass spectrometry peptide sequencing with a transformer model. in Proceedings of the 39th International Conference on Machine Learning - ICML '22 vol. 162 25514–25522 (PMLR, 2022). https://proceedings.mlr.press/v162/yilmaz22a.html
• Yilmaz, M., Fondrie, W. E., Bittremieux, W., Nelson, R., Ananth, V., Oh, S. & Noble, W. S. Sequence-to-sequence translation from mass spectra to peptides with a transformer model. in bioRxiv (2023). doi:10.1101/2023.01.03.522621

Documentation

https://casanovo.readthedocs.io/en/latest/