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CaSQ: Celldesigner as Sbml-Qual

Project description

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CaSQ converts CellDesigner models to Boolean models encoded in SBML-Qual with a rather strict semantics defined in a submitted article.

Install

CaSQ is provided as a Python (>= 3.5) package, you can install it from the Python package index with pip, conda or your Python package manager of choice:

$ pip3 install casq

Usage

Just follow the instructions:

$ casq --help
usage: casq [-h] [-v] [-d] [-c] [-s] [-r S] [infile] [outfile]

Convert CellDesigner models to SBML-qual with a rather strict semantics.
Copyright (C) 2019-2020 Sylvain.Soliman@inria.fr GPLv3

positional arguments:
  infile            CellDesigner File
  outfile           SBML-Qual File

optional arguments:
  -h, --help        show this help message and exit
  -v, --version     show program's version number and exit
  -d, --debug       Display a lot of debug information
  -c, --csv         Store the species information in a separate CSV file
  -s, --sif         Store the influence information in a separate SIF file
  -r S, --remove S  Delete connected components in the resulting model if
                    their size is smaller than S. A negative S leads to keep
                    only the biggest(s) connected component(s)

Project details


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Files for casq, version 0.8.6
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Filename, size casq-0.8.6.tar.gz (247.4 kB) File type Source Python version None Upload date Hashes View

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