Skip to main content

CaSQ: Celldesigner as Sbml-Qual

Project description

   ______      _____ ____
  / ____/___ _/ ___// __ \
 / /   / __ `/\__ \/ / / /
/ /___/ /_/ /___/ / /_/ /

pipeline status coverage report Code style: black Documentation Status PyPI - License

PyPI PyPI - Python Version PyPI - Wheel PyPI - Downloads dependency status for latest release

CaSQ converts CellDesigner models to Boolean models encoded in SBML-Qual with a rather strict semantics defined in a submitted article.


CaSQ is provided as a Python (>= 3.5) package, you can install it from the Python package index with pip, conda or your Python package manager of choice:

$ pip3 install casq


Just follow the instructions:

$ casq --help
usage: casq [-h] [-v] [-d] [-c] [-s] [-r S] [infile] [outfile]

Convert CellDesigner models to SBML-qual with a rather strict semantics.
Copyright (C) 2019-2020 GPLv3

positional arguments:
  infile            CellDesigner File
  outfile           SBML-Qual File

optional arguments:
  -h, --help        show this help message and exit
  -v, --version     show program's version number and exit
  -d, --debug       Display a lot of debug information
  -c, --csv         Store the species information in a separate CSV file
  -s, --sif         Store the influence information in a separate SIF file
  -r S, --remove S  Delete connected components in the resulting model if
                    their size is smaller than S. A negative S leads to keep
                    only the biggest(s) connected component(s)

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for casq, version 0.8.6
Filename, size File type Python version Upload date Hashes
Filename, size casq-0.8.6-py3-none-any.whl (16.1 kB) File type Wheel Python version py3 Upload date Hashes View
Filename, size casq-0.8.6.tar.gz (247.4 kB) File type Source Python version None Upload date Hashes View

Supported by

Pingdom Pingdom Monitoring Google Google Object Storage and Download Analytics Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page