Coppafish, Antibody Staining, and Two-photon alignment: 3D nonlinear alignment for microscopy and in vivo imaging
Project description
CASTalign: Coppafish, Antibody Staining, and Two-photon alignment
CASTalign allows you to register 3D microscopy images to each other and to in vivo two-photon imaging. It is optimised to allow registration between CoppaFISH 3D, antibody staining (e.g., immunofluorescence), and in vivo imaging.
Installation
To install, you need the following packages:
pip install numpy scipy napari magicgui vispy scikit-image imageio imageio-ffmpeg
Usage
See the tutorial in the documentation.
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