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A Keras-based entity embedding encoder for tabular ML and GBM pipelines

Project description

Category Embedding

A Keras-based neural encoder for categorical variables in tabular machine learning.
It learns dense vector representations (embeddings) for categorical features and outputs a clean numeric DataFrame that integrates seamlessly with gradient-boosted tree models.

This library is designed for ML engineers who want the benefits of deep-learning-based embeddings without replacing their GBM models.
It is sklearn-compatible, deterministic, and production-ready.


🚀 Features

  • Multi-column categorical embeddings
    Each categorical feature receives its own learned embedding matrix.

  • Smart default embedding dimensions
    Uses a simple, interpretable rule:

    • If n_cat ≤ 10: dim = n_cat - 1
    • Else: dim = max(10, n_cat // 2)
    • Always capped at 50.
  • Per-column embedding dimension overrides
    Pass a list of integers to control embedding size manually.

  • Hashing for unseen categories
    Unseen values at inference time are deterministically mapped into valid embedding indices.

  • Residual MLP architecture
    LayerNorm + GELU + Dropout + skip connections for stable training.

  • Supports regression and binary classification
    The neural head is used only for training/tuning; GBMs remain the final predictor.

  • Optional external validation set
    Enables clean early stopping and stable embedding learning.

  • Sklearn-compatible API
    Implements fit, transform, predict, and get_feature_names_out.

  • Outputs a pandas DataFrame
    Perfect for LightGBM, XGBoost, CatBoost, or any sklearn model.


📦 Installation

pip install category-embedding

Requires:

  • Python ≥ 3.9
  • TensorFlow ≥ 2.12
  • scikit-learn ≥ 1.2
  • pandas ≥ 1.5

🔧 Quick Start

import pandas as pd
import lightgbm as lgb
from category_embedding import CategoryEmbedding

df = pd.DataFrame({
    "country": ["DE", "FR", "DE", "US", "US"],
    "device": ["mobile", "desktop", "tablet", "mobile", "desktop"],
    "age": [25, 40, 31, 22, 35],
})
y = [10.5, 20.1, 15.3, 8.7, 18.0]

enc = CategoryEmbedding(
    task="regression",
    categorical_cols=["country", "device"],
    numeric_cols=["age"],
    epochs=20,
    batch_size=32,
)

enc.fit(df, y)
X_emb = enc.transform(df)

train_ds = lgb.Dataset(X_emb, label=y)
params = {"objective": "regression", "metric": "rmse"}

model = lgb.train(params, train_ds, num_boost_round=200)

🧠 Why Use Category Embedding?

Traditional encoders struggle with:

  • high-cardinality categorical features
  • sparse interactions
  • noisy or rare categories

Neural embeddings solve this by learning dense, continuous representations that capture similarity structure between categories.

This library gives you:

  • the power of deep learning
  • the simplicity and performance of GBMs
  • a clean sklearn interface
  • deterministic, production-ready behavior

⚙️ API Overview

CategoryEmbedding(...)

Key parameters:

  • task: "regression" or "classification"
  • categorical_cols: list of categorical column names
  • numeric_cols: list of numeric column names
  • embedding_dims: optional list of per-column embedding sizes
  • hidden_units: width of each residual block
  • n_blocks: number of residual blocks
  • dropout_rate: dropout inside residual blocks
  • lr: learning rate
  • batch_size, epochs
  • val_set: optional (X_val, y_val) tuple for early stopping

.fit(X, y)

Trains the embedding model.

.transform(X)

Returns a DataFrame containing all learned embeddings and numeric features.

.predict(X)

Uses the neural head for tuning/evaluation.

.get_feature_names_out()

Returns the names of the output columns.


📊 Example: Using Embeddings with XGBoost

import xgboost as xgb

X_train_emb = enc.transform(X_train)
X_test_emb = enc.transform(X_test)

dtrain = xgb.DMatrix(X_train_emb, label=y_train)
dtest = xgb.DMatrix(X_test_emb, label=y_test)

params = {"objective": "reg:squarederror"}
model = xgb.train(params, dtrain, num_boost_round=300)

🔑 Keywords

machine learning, deep learning, tabular data, categorical encoding, entity embeddings, category embeddings, neural encoder, keras, tensorflow, scikit-learn, sklearn transformer, feature engineering, gradient boosting, lightgbm, xgboost, embeddings for gbm, high-cardinality features, optuna tuning, ml pipelines


📄 License

This project is licensed under the MIT License. See the LICENSE file for details.

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