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A Keras-based entity embedding encoder for tabular ML and GBM pipelines

Project description

Category Embedding

A Keras-based neural encoder for categorical variables in tabular machine learning.
It learns dense vector representations (embeddings) for categorical features and outputs a clean numeric DataFrame that integrates seamlessly with gradient-boosted tree models.

This library is designed for ML engineers who want the benefits of deep-learning-based embeddings without replacing their GBM models.
It is sklearn-compatible, deterministic, and production-ready.


🚀 Features

  • Multi-column categorical embeddings
    Each categorical feature receives its own learned embedding matrix.

  • Smart default embedding dimensions
    Uses a simple, interpretable rule:

    • If n_cat ≤ 10: dim = n_cat - 1
    • Else: dim = max(10, n_cat // 2)
    • Always capped at 30.
  • Per-column embedding dimension overrides
    Pass a list of integers to control embedding size manually.

  • Hashing for unseen categories
    Unseen values at inference time are deterministically mapped into valid embedding indices.

  • Residual MLP architecture
    LayerNorm + GELU + Dropout + skip connections for stable training.

  • Automatic numeric feature scaling
    Numeric columns are scaled using StandardScaler during training.
    You can choose whether the transformed output returns scaled or raw numeric values via scaled_num_out.

  • Optional log-scaling of regression targets
    For regression tasks, the target can be optionally transformed using log(y + 1e-6) during training (and inverse-transformed at prediction time) by setting log_target=True.

  • Supports regression and binary classification
    The neural head is used only for training/tuning; GBMs remain the final predictor.

  • Optional external validation set
    Enables clean early stopping and stable embedding learning.

  • Sklearn-compatible API
    Implements fit, transform, predict, and get_feature_names_out.

  • Outputs a pandas DataFrame
    Perfect for LightGBM, XGBoost, CatBoost, or any sklearn model.


📦 Installation

pip install category-embedding

Requires:

  • Python ≥ 3.9
  • TensorFlow ≥ 2.12
  • scikit-learn ≥ 1.2
  • pandas ≥ 1.5

🔧 Quick Start

import pandas as pd
from sklearn.compose import ColumnTransformer
from sklearn.pipeline import Pipeline
from lightgbm import LGBMRegressor
from category_embedding import CategoryEmbedding

df = pd.DataFrame({
    "country": ["DE", "FR", "DE", "US", "US"],
    "device": ["mobile", "desktop", "tablet", "mobile", "desktop"],
    "age": [25, 40, 31, 22, 35],
})
y = [10.5, 20.1, 15.3, 8.7, 18.0]

categorical = ["country", "device"]
numeric = ["age"]

# CategoryEmbedding acts as a transformer inside a sklearn pipeline
preprocess = ColumnTransformer(
    transformers=[
        ("emb", CategoryEmbedding(
            task="regression",
            categorical_cols=categorical,
            numeric_cols=numeric,
            epochs=20,
            batch_size=32,
            scaled_num_out=True,   # return scaled numeric features
        ), categorical + numeric)
    ],
    remainder="drop",
)

model = Pipeline([
    ("prep", preprocess),
    ("lgbm", LGBMRegressor(n_estimators=300, learning_rate=0.05)),
])

model.fit(df, y)
preds = model.predict(df)

🧠 Why Use Category Embedding?

Traditional encoders struggle with:

  • high-cardinality categorical features
  • sparse interactions
  • noisy or rare categories

Neural embeddings solve this by learning dense, continuous representations that capture similarity structure between categories.

This library gives you:

  • the power of deep learning
  • the simplicity and performance of GBMs
  • a clean sklearn interface
  • deterministic, production-ready behavior
  • automatic numeric scaling and target log-transforming for stable training

⚙️ API Overview

CategoryEmbedding(...)

log_target : bool, default=False Whether to apply a log transformation to the target variable for regression tasks.

Parameters

Parameter Type Default Description
task "regression" or "classification" "regression" Determines loss function.
log_target bool False Whether to apply a log transformation to the target variable for regression tasks.
categorical_cols list[str] or None None Names of categorical columns to embed.
numeric_cols list[str] or None None Names of numeric columns to include as inputs.
embedding_dims list[int] or None None Optional list of integers specifying the embedding dimension for each categorical column, in the same order as categorical_cols. If None, a per-column default rule is used (if n_cat <= 10: dim = n_cat - 1, else: dim = max(10, n_cat // 2), in all cases: dim <= 30.
hidden_units int 64 Width of each residual MLP block.
n_blocks int 2 Number of residual blocks.
dropout_rate float 0.2 Dropout rate inside residual blocks and before output head.
l2_emb float 1e-6 L2 regularization for embedding weights.
l2_dense float 1e-6 L2 regularization for dense layers.
batch_size int 512 Training batch size.
epochs int 30 Maximum number of training epochs.
lr float 2e-3 Learning rate for Adam optimizer.
random_state int 42 TensorFlow random seed.
verbose int 1 Verbosity passed to Keras .fit().
patience int 4 Early stopping patience.
reduce_lr_factor float 0.5 LR reduction factor when validation loss plateaus.
reduce_lr_patience int 2 Patience before reducing LR.
val_set tuple(X_val, y_val) or None None Optional external validation set.
scaled_num_out bool True If True, transform() returns scaled numeric columns; otherwise raw.

Methods

.fit(X, y)

Trains the embedding model:

  • learns embeddings
  • fits numeric scaler
  • applies log-scaling to regression targets
  • trains the neural model

.transform(X)

Returns a DataFrame containing:

  • learned embeddings
  • numeric features (scaled or raw depending on scaled_num_out)

.predict(X)

Uses the neural head for tuning/evaluation.
For regression: automatically applies inverse log-transform.

.get_feature_names_out()

Returns the names of all output columns.


🔑 Keywords

machine learning, deep learning, tabular data, categorical encoding, entity embeddings, category embeddings, neural encoder, keras, tensorflow, scikit-learn, sklearn transformer, feature engineering, gradient boosting, lightgbm, xgboost, embeddings for gbm, high-cardinality features, optuna tuning, ml pipelines


📄 License

This project is licensed under the MIT License. See the LICENSE file for details.

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